| Week | Contents | Assignments | Tools |
| 1 | Asymptotic complexity of algorithms, How to publish!, LATEX experiment | LaTEX, TEXnicCenter | |
| 2 | String matching algorithms, Rabin Karp, Finite automata, Knuth-Morris-Pratt, Graphviz experiment | Hello LaTEX | Graphviz, Freemind, AcroEdit |
| 3 | Suffix tree, Suffix array, SQL injection experiment, BibTeX | ||
| 4 | Greedy algorithms, Dynamic programming, Longest common sequence experiment | ||
| 5 | Decision tree learning algorithm as a greedy algorithms, Pairwise sequence alignment (Local alignment, Global alignment), Multiple sequence alignment, WinMerge/diff experiment | HW1 | BioJava |
| 6 | Naive Bayes, Bag of words, Generative model for sequences, n-gram augmented Naive Bayes, WEKA & Spam filter experiment | WEKA | |
| 7 | Hidden markov model, Conditional random fields, Text classification (bag of words, set of words) | Mallet, CRF pacakge, CRF++ | |
| 8 | Mid-Term | Lab1 | |
| 9 | Turing machine, Hilbert's hotel, Cantor's set theory | ||
| 10 | Entropy, Kolmogorov complexity, Model selection criteria (Bayesian information criteria, Akaike information criteria) | ||
| 11 | Host-based/Network-based intrusion detection, User behavior modelling UNM process traces experiment (bag, n-grams, sequence alignment) | HW2 | WEKA |
| 12 | Association rule discovery, Frequent patterns, Sequential association rule discovery, WEKA's Apriori algorithm experiment | WEKA | |
| 13 | Time series : ARIMA Model, ARMA Model, ARMAX Model, State Space Model, Experiments with R | R Package | |
| 14 | Kalman filter, Particle filter, Experiments with R | Take-Home Exam | R Package |
| 15 | Project presentation | ||
| 16 | Final Exam |